... 2022-03-11 16:14:38,228:WARNING:Found unstaged changes in '/afs/crc.nd.edu/user/k/kmohrman/coffea_dir/check_PRs/master_for_benchmarking/topcoffea' 2022-03-11 16:14:38,230:WARNING:Rebuilding environment because unstaged changes in topcoffea 2022-03-11 16:14:38,230:INFO:Forcing rebuilding of /afs/crc.nd.edu/user/k/kmohrman/coffea_dir/check_PRs/master_for_benchmarking/topcoffea/analysis/topEFT/topeft-envs/env_spec_7e68091e_edit_HEAD.tar.gz 2022-03-11 16:14:38,238:INFO:base env specification: { "conda": { "channels": [ "conda-forge" ], "packages": [ "python=3.9.10", "pip", "conda", "conda-pack", "dill", "xrootd" ] }, "pip": [ "coffea==0.7.12", "topcoffea" ] } 2022-03-11 16:14:38,238:INFO:Creating environment /afs/crc.nd.edu/user/k/kmohrman/coffea_dir/check_PRs/master_for_benchmarking/topcoffea/analysis/topEFT/topeft-envs/env_spec_7e68091e_edit_HEAD.tar.gz 2022-03-11 16:14:39,712:INFO:Creating temporary environment in /tmp/tmpb37din6w 2022-03-11 16:14:39,713:INFO:Converting spec file... 2022-03-11 16:14:39,713:INFO:Fetching git data... 2022-03-11 16:14:39,713:INFO:Fetching http data... 2022-03-11 16:14:39,713:INFO:Populating environment... 2022-03-11 16:15:38,021:WARNING:Error executing: conda env create --prefix=/tmp/tmpb37din6w --file /tmp/tmpb37din6w/conda_spec.yml Collecting package metadata (repodata.json): ...working... failed # >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<< Traceback (most recent call last): File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/exceptions.py", line 1080, in __call__ return func(*args, **kwargs) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda_env/cli/main.py", line 80, in do_call exit_code = getattr(module, func_name)(args, parser) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda_env/cli/main_create.py", line 141, in execute result[installer_type] = installer.install(prefix, pkg_specs, args, env) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda_env/installers/conda.py", line 50, in install unlink_link_transaction = solver.solve_for_transaction( File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/solve.py", line 114, in solve_for_transaction unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier, File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/solve.py", line 157, in solve_for_diff final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned, File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/solve.py", line 262, in solve_final_state ssc = self._collect_all_metadata(ssc) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/common/io.py", line 88, in decorated return f(*args, **kwds) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/solve.py", line 425, in _collect_all_metadata index, r = self._prepare(prepared_specs) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/solve.py", line 1020, in _prepare reduced_index = get_reduced_index(self.prefix, self.channels, File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/index.py", line 288, in get_reduced_index new_records = SubdirData.query_all(spec, channels=channels, subdirs=subdirs, File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/subdir_data.py", line 140, in query_all result = tuple(concat(executor.map(subdir_query, channel_urls))) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/concurrent/futures/_base.py", line 609, in result_iterator yield fs.pop().result() File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/concurrent/futures/_base.py", line 446, in result return self.__get_result() File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result raise self._exception File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/concurrent/futures/thread.py", line 58, in run result = self.fn(*self.args, **self.kwargs) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/subdir_data.py", line 132, in subdir_query = lambda url: tuple(SubdirData(Channel(url), repodata_fn=repodata_fn).query( File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/subdir_data.py", line 145, in query self.load() File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/subdir_data.py", line 210, in load _internal_state = self._load() File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/subdir_data.py", line 356, in _load _internal_state = self._read_local_repdata(mod_etag_headers.get('_etag'), File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/subdir_data.py", line 442, in _read_local_repdata _internal_state = self._process_raw_repodata_str(raw_repodata_str) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/site-packages/conda/core/subdir_data.py", line 480, in _process_raw_repodata_str json_obj = json.loads(raw_repodata_str or '{}') File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/json/__init__.py", line 346, in loads return _default_decoder.decode(s) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/json/decoder.py", line 337, in decode obj, end = self.raw_decode(s, idx=_w(s, 0).end()) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/json/decoder.py", line 353, in raw_decode obj, end = self.scan_once(s, idx) json.decoder.JSONDecodeError: Expecting property name enclosed in double quotes: line 2570243 column 6 (char 77802432) `$ /afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/bin/conda-env create --prefix=/tmp/tmpb37din6w --file /tmp/tmpb37din6w/conda_spec.yml` environment variables: CIO_TEST= CMAKE_PREFIX_PATH=/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea- env6:/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea- env6/x86_64-conda-linux-gnu/sysroot/usr CMS_PATH=/cvmfs/cms.cern.ch CONDA_AUTO_UPDATE_CONDA=false CONDA_BUILD_SYSROOT=/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea- env6/x86_64-conda-linux-gnu/sysroot CONDA_DEFAULT_ENV=topcoffea-env6 CONDA_EXE=/afs/crc.nd.edu/user/k/kmohrman/miniconda3/bin/conda CONDA_PREFIX=/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6 CONDA_PROMPT_MODIFIER=(topcoffea-env6) CONDA_PYTHON_EXE=/afs/crc.nd.edu/user/k/kmohrman/miniconda3/bin/python CONDA_ROOT=/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6 CONDA_SHLVL=1 CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu CURL_CA_BUNDLE= LD_LIBRARY_PATH=/opt/crc/usr/local/lib:/cvmfs/oasis.opensciencegrid.org/mis/osg-wn-cli ent/3.5/3.5.57-1/el7-x86_64/lib64:/cvmfs/oasis.opensciencegrid.org/mis /osg-wn-client/3.5/3.5.57-1/el7-x86_64/lib:/cvmfs/oasis.opensciencegri d.org/mis/osg-wn-client/3.5/3.5.57-1/el7-x86_64/usr/lib64:/cvmfs/oasis .opensciencegrid.org/mis/osg-wn-client/3.5/3.5.57-1/el7-x86_64/usr/lib :/cvmfs/oasis.opensciencegrid.org/mis/osg-wn-client/3.5/3.5.57-1/el7-x 86_64/usr/lib64/dcap:/cvmfs/oasis.opensciencegrid.org/mis/osg-wn-clien t/3.5/3.5.57-1/el7-x86_64/usr/lib64/lcgdm::/opt/condor/RedHat7_tokens/ lib:/opt/condor/RedHat7_tokens/lib64 MANPATH=/opt/crc/usr/local/man:/cvmfs/oasis.opensciencegrid.org/mis/osg-wn-cli ent/3.5/3.5.57-1/el7-x86_64/usr/share/man:/cvmfs/cms.cern.ch/share/man : MODULEPATH=/afs/crc.nd.edu/x86_64_linux/Modules/modules/development_tools_and_lib raries:/afs/crc.nd.edu/x86_64_linux/Modules/modules/general_software:/ afs/crc.nd.edu/x86_64_linux/Modules/modules/restricted_software:/afs/c rc.nd.edu/x86_64_linux/Modules/modules/system_modules:/afs/crc.nd.edu/ x86_64_linux/Modules/modules/deprecated_software:/afs/crc.nd.edu/x86_6 4_linux/Modules/current/modulefiles PATH=/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/bin:/af s/crc.nd.edu/user/k/kmohrman/miniconda3/condabin:/afs/crc.nd.edu/group /ccl/software:/afs/crc.nd.edu/group/ccl/software/x86_64/redhat7/cctool s/lobster-171-cd5e3e2c-cvmfs-70dfa0d6/bin:/afs/crc.nd.edu/x86_64_linux /Modules/4.7.0/bin:/opt/crc/usr/local/bin:/cvmfs/oasis.opensciencegrid .org/mis/osg-wn-client/3.5/3.5.57-1/el7-x86_64/usr/bin:/cvmfs/oasis.op ensciencegrid.org/mis/osg-wn-client/3.5/3.5.57-1/el7-x86_64/usr/sbin:/ cvmfs/cms.cern.ch/common:/opt/condor/RedHat7_tokens/sbin:/opt/condor/R edHat7_tokens/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/bin: /usr/bin:/usr/local/sbin:/usr/sbin:/opt/dell/srvadmin/bin:/afs/crc.nd. edu/user/k/kmohrman/bin REQUESTS_CA_BUNDLE= SITECONFIG_PATH=/cvmfs/cms.cern.ch/SITECONF/local SSL_CERT_FILE= active environment : base active env location : /afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6 shell level : 1 user config file : /afs/crc.nd.edu/user/k/kmohrman/.condarc populated config files : /afs/crc.nd.edu/user/k/kmohrman/.condarc conda version : 4.11.0 conda-build version : not installed python version : 3.9.10.final.0 virtual packages : __linux=3.10.0=0 __glibc=2.17=0 __unix=0=0 __archspec=1=x86_64 base environment : /afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6 (writable) conda av data dir : /afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/etc/conda conda av metadata url : None channel URLs : https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/pkgs /afs/crc.nd.edu/user/k/kmohrman/.conda/pkgs envs directories : /afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/envs /afs/crc.nd.edu/user/k/kmohrman/.conda/envs platform : linux-64 user-agent : conda/4.11.0 requests/2.27.1 CPython/3.9.10 Linux/3.10.0-1160.59.1.el7.x86_64 rhel/7.9 glibc/2.17 UID:GID : 230547:1313 netrc file : None offline mode : False An unexpected error has occurred. Conda has prepared the above report. If submitted, this report will be used by core maintainers to improve future releases of conda. Would you like conda to send this report to the core maintainers? [y/N]: Timeout reached. No report sent. Traceback (most recent call last): File "/afs/crc.nd.edu/user/k/kmohrman/coffea_dir/check_PRs/master_for_benchmarking/topcoffea/analysis/topEFT/work_queue_run.py", line 221, in 'environment_file': topeftenv.get_environment(), File "/afs/crc.nd.edu/user/k/kmohrman/coffea_dir/check_PRs/master_for_benchmarking/topcoffea/analysis/topEFT/topeftenv.py", line 149, in get_environment return _create_env(env_name, force) File "/afs/crc.nd.edu/user/k/kmohrman/coffea_dir/check_PRs/master_for_benchmarking/topcoffea/analysis/topEFT/topeftenv.py", line 68, in _create_env subprocess.check_call(['poncho_package_create', f.name, env_name]) File "/afs/crc.nd.edu/user/k/kmohrman/miniconda3/envs/topcoffea-env6/lib/python3.9/subprocess.py", line 373, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['poncho_package_create', '/tmp/tmpqre1z8wy', '/afs/crc.nd.edu/user/k/kmohrman/coffea_dir/check_PRs/master_for_benchmarking/topcoffea/analysis/topEFT/topeft-envs/env_spec_7e68091e_edit_HEAD.tar.gz']' returned non-zero exit status 1. real 1m6.130s user 0m20.758s sys 0m4.546s